Welcome to microbiomics.io!

A collection of bioinformatic resources for research in microbiology.

Databases


mOTUs-db

Explore ~4 million prokaryotic genomes from over 50 environments at your fingertips

OMDB

Inspect, download and search sequences and annotations of the global ocean microbiome

RMD

Explore and download biosynthetic gene clusters from reef microbiomes

Tools


mOTUs

Profile 124,295 prokaryotic species from metagenomics data

mVIRs

Locate and extract inducible prophage sequences from bacterial host genomes

mTAGs

Profile microbial communities based on ribosomal rRNA fragments in metagenomics data

mBARq

Process and analyse barcoded mutant libraries for any transposon construct

mTRAc

Predict bacterial growth states from (meta‑)transcriptomics data

kTYPr

Predict K-antigen type in Escherichia coli using HMM-based annotation profiling

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All data are freely available under a CC BY 4.0 license.